Modware next generation with pub module

Modware: Its latest development using Moose and Bio::Chado::Schema Siddhartha Basu dictyBase http://www.dictybase.org Center for Genetic Medicine Northwestern University

[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Modware - Chado middleware

[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Modware - Chado middleware

Modware Datasource ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

CRUD API use Modware::Publication::Pubmed; use Modware::Publication::Author ; my $pub = Modware::Publication::Pubmed->new ( year => 2010, status => ‘published’, cv => ‘pub_type’ ); $pub->pubmed_id(332228); $pub->journal(‘JBC’); $pub->abstract(‘This is a cool abstarct’); $pub->title(‘Charming); $pub->add_author( Modware::Publication::Author->new( first_name => ‘Larry’, last_name => ‘Johnson’, initials => ‘Mr.’ ) );

[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Finder/Search API ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Web application (List of publication)

Web application(Literature curation)

Command line tools ,[object Object],[object Object],[object Object],[object Object],[object Object]

Experimental builder API package Modware::Publication::Pubmed; use Modware::Chado; bcs_resultset ‘Pub::Pub’; chado_has $_ for qw/title pages issue volume/; chado_has ‘pub_id’ => (column => ‘primary’); chado_has ‘year’ => (column => ‘pyear’); chado_has ‘pubmed_id’ => (column => ‘uniquename’);

chado_type ‘type’ => (cv => ‘pub_type’); chado_property ‘abstract’ => (cv => ‘pub_type’, cvterm => ‘pub_abstract’); chado_has_many ‘authors’ => (class => ‘Modware::Publication::Author’);

package Modware::Chado::Stock; use Modware::Chado; bcs_resultset ‘Stock::Stock; chado_dbxref ‘id’ => (db => ‘Stock’); chado_belongs_to ‘organism’ => (class => ‘Modware::Chado::Organism’);

Project information ,[object Object],[object Object],[object Object]

Related Projects ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Acknowledgements ,[object Object],[object Object],[object Object],[object Object]

Modware next generation with pub module

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