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Bringing Eco-Biological Metadata to
         Eco-
the INSPIRE metainformation world
        Alessandro Oggioni & Tomáš Kliment




                GI2011-X-BORDER-SDI/GDI
                       Symposium
      23-24/5/2011 BAD SCHANDAU (SAX) # DECIN (CZE)
Outlines
  •   EnvEurope project overview
  •   EnvEurope use cases
  •   Metadata in EnvEurope
  •   EnvEurope&INSPIRE
  •   Crosswalk EML2INSPIRE (ISO)
  •   Conclusions&Future work


                                    GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                              23-24/5/2011
                                           Symposium
EnvEurope project
  • Proposes a design for environmental high
    quality monitoring and long-term research
    sites
  • Exemplary establishment of common
    parameter sets to be collected across LTER
    Europe network
  • Based on existing infrastructures = lot of
    valuable date series
  • Focuses on 3 types of ecosystems
    (terrestrial, marine and freshwater)

                                   GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                             23-24/5/2011
                                          Symposium
EnvEurope project
  • Aims to select&collect data from E-LTER to
    provide information on environmental
    quality in respect of indicators and
    methodologies applied in main European
    networks (E-ELTER, EIONET, Natura2000, etc.
  • Reorganise E-LTER network on the basis of
    suitable sites, reflecting ecological, political,
    economic stratification of Europe = will
    contribute to SEIS and GMES
                                   GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                             23-24/5/2011
                                          Symposium
EnvEurope project – use cases
  •   2 user groups
  •   Exchange data
  •   Services
  •   Metadata




                                   GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                             23-24/5/2011
                                          Symposium
Metadata in EnvEurope

  • Metadata levels
        – Site level metadata - LTER InfoBase
          metadata online entry point
        – Dataset level metadata – no centralized
          metadata management tool, no online
          discoverable metadata
        – Both levels are important for users


                                   GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                             23-24/5/2011
                                          Symposium
Dataset level metadata
 • EnvEurope MD specification development
        – Reference MD specification – EML
        – Extent definition - which element for what
          purposes (discovery, evaluation,
          use)?&What is required by INSPIRE
          legislation?
        – Documentation – UML, element details,
          XML examples
        – Implementation – MD management tool
 • Metadata acquisition and USE
                                   GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                             23-24/5/2011
                                          Symposium
EnvEurope MD specification
  Conceptual model – UML class diagrams derived
    from XML schemas




                                   GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                             23-24/5/2011
                                          Symposium
EnvEurope MD specification
  MD elements description tables
        Metadata element name      Dataset title
        Definition                 Provides a name of the dataset that is being documented as is
                                   known within community.
        Obligation/condition       Mandatory
        Multiplicity               1
        INSPIRE/ISO element        1.1 Resource title/360. Title
        Example                    •Density and Biomass of phytoplankton in Lake Candia (1986)
        Example EML XML encoding   <title>Density and Biomass of phytoplankton in Lake Candia
                                   (1986)</title>
        Example INSPIRE XML        <gmd:title>
        encoding                    <gco:CharacterString>Density and Biomass of phytoplankton in
                                   Lake Candia (1986)</gco:CharacterString>
                                   </gmd:title>



  • Totally 20 MD elements defined and described
    in this way
                                             GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                                                                   23-24/5/2011
                                                    Symposium
EnvEurope&INSPIRE




        •    Domain overlaps defined within 3 INSPIRE data themes
        •    Registration as INSPIRE SDIC
        •    Experts participation within TWG BR-HB-SD
        •    INSPIRE Annex II+III Data Specification Testing participation
                                   GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                                23-24/5/2011
                                          Symposium
Crosswalk EML2INSPIRE (ISO)
  • Methodology                                              Specification frame

                                       Harmonized
             Harmonization                                        XML schema
                                   Standard description

                                                                               Title
                Semantic                     Source2Target                      to
                mapping                    element mappings                Resource title



                                                                            Join, Concat,
                Additional                     Additional                   Group by0
                  rules                   transformation rules              Constant,


                                                                      <xsl:for-each select=
                                                                      "$var1_instance/n:eml/dataset

                                               Stylesheets            metadataProvider/

            Implementation                                            organizationName">
                                                                      <gco:CharacterString>

                                                  (XSL)                <xsl:sequence select="xs:string(.)"/>
                                                                      </gco:CharacterString>
                                                                      </xsl:for-each>



                                   GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                                          23-24/5/2011
                                          Symposium
Crosswalk EML2INSPIRE (ISO)
   • Harmonization
          ISO                                                 EML




conceptual level
application level




                                    GI2011-X-BORDER-SDI/GDI
 BAD SCHANDAU (SAX) # DECIN (CZE)                                   23-24/5/2011
                                           Symposium
Crosswalk EML2INSPIRE (ISO)
  • Semantic mapping




                                   GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                             23-24/5/2011
                                          Symposium
Crosswalk EML2INSPIRE (ISO)
  • Additional rules
        –   Concatenate
        –   Grouping
        –   Constant definition
        –   String joining
        –   Data type definition
        –   Combination of them


                                   GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                             23-24/5/2011
                                          Symposium
Crosswalk EML2INSPIRE (ISO)
  • Implementation – mapping realization
    in Altova MapForce




                                   GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                             23-24/5/2011
                                          Symposium
Crosswalk EML2INSPIRE (ISO)

  • Implementation – result
            eml2inspire.xslt




                                   GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                             23-24/5/2011
                                          Symposium
Crosswalk EML2INSPIRE (ISO)
  • Transformation performance




      eml2inspire.xslt



                                   GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                             23-24/5/2011
                                          Symposium
Crosswalk EML2INSPIRE (ISO)
  • Transformation result check - ISO




                                   GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                             23-24/5/2011
                                          Symposium
Crosswalk EML2INSPIRE (ISO)

  • Transformation result check - INSPIRE




                                   GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                             23-24/5/2011
                                          Symposium
Conclusions&Future work
  • Developed MD specification should
    satisfy both EnvEurope users&INSPIRE
  • Partial efforts to bring EML2ISO has
    been realized
  • Further mapping has to be done
  • EnvEurope MD management system
    has to be implemented
  • We have to get dirty with MD and
    collect them
                                   GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                             23-24/5/2011
                                          Symposium
Thank you very much for your
                      attention!

  Italian National Research Council - Institute of Ecosystem Study
  Italian National Research Council - Institute of Marine Sciences
                        a.oggioni@ise.cnr .it
                     tomas.kliment@gmail.com


                                   GI2011-X-BORDER-SDI/GDI
BAD SCHANDAU (SAX) # DECIN (CZE)                             23-24/5/2011
                                          Symposium

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Kliment oggioni ppt_gi2011_env_europe_remote_final

  • 1. Bringing Eco-Biological Metadata to Eco- the INSPIRE metainformation world Alessandro Oggioni & Tomáš Kliment GI2011-X-BORDER-SDI/GDI Symposium 23-24/5/2011 BAD SCHANDAU (SAX) # DECIN (CZE)
  • 2. Outlines • EnvEurope project overview • EnvEurope use cases • Metadata in EnvEurope • EnvEurope&INSPIRE • Crosswalk EML2INSPIRE (ISO) • Conclusions&Future work GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 3. EnvEurope project • Proposes a design for environmental high quality monitoring and long-term research sites • Exemplary establishment of common parameter sets to be collected across LTER Europe network • Based on existing infrastructures = lot of valuable date series • Focuses on 3 types of ecosystems (terrestrial, marine and freshwater) GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 4. EnvEurope project • Aims to select&collect data from E-LTER to provide information on environmental quality in respect of indicators and methodologies applied in main European networks (E-ELTER, EIONET, Natura2000, etc. • Reorganise E-LTER network on the basis of suitable sites, reflecting ecological, political, economic stratification of Europe = will contribute to SEIS and GMES GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 5. EnvEurope project – use cases • 2 user groups • Exchange data • Services • Metadata GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 6. Metadata in EnvEurope • Metadata levels – Site level metadata - LTER InfoBase metadata online entry point – Dataset level metadata – no centralized metadata management tool, no online discoverable metadata – Both levels are important for users GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 7. Dataset level metadata • EnvEurope MD specification development – Reference MD specification – EML – Extent definition - which element for what purposes (discovery, evaluation, use)?&What is required by INSPIRE legislation? – Documentation – UML, element details, XML examples – Implementation – MD management tool • Metadata acquisition and USE GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 8. EnvEurope MD specification Conceptual model – UML class diagrams derived from XML schemas GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 9. EnvEurope MD specification MD elements description tables Metadata element name Dataset title Definition Provides a name of the dataset that is being documented as is known within community. Obligation/condition Mandatory Multiplicity 1 INSPIRE/ISO element 1.1 Resource title/360. Title Example •Density and Biomass of phytoplankton in Lake Candia (1986) Example EML XML encoding <title>Density and Biomass of phytoplankton in Lake Candia (1986)</title> Example INSPIRE XML <gmd:title> encoding <gco:CharacterString>Density and Biomass of phytoplankton in Lake Candia (1986)</gco:CharacterString> </gmd:title> • Totally 20 MD elements defined and described in this way GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 10. EnvEurope&INSPIRE • Domain overlaps defined within 3 INSPIRE data themes • Registration as INSPIRE SDIC • Experts participation within TWG BR-HB-SD • INSPIRE Annex II+III Data Specification Testing participation GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 11. Crosswalk EML2INSPIRE (ISO) • Methodology Specification frame Harmonized Harmonization XML schema Standard description Title Semantic Source2Target to mapping element mappings Resource title Join, Concat, Additional Additional Group by0 rules transformation rules Constant, <xsl:for-each select= "$var1_instance/n:eml/dataset Stylesheets metadataProvider/ Implementation organizationName"> <gco:CharacterString> (XSL) <xsl:sequence select="xs:string(.)"/> </gco:CharacterString> </xsl:for-each> GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 12. Crosswalk EML2INSPIRE (ISO) • Harmonization ISO EML conceptual level application level GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 13. Crosswalk EML2INSPIRE (ISO) • Semantic mapping GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 14. Crosswalk EML2INSPIRE (ISO) • Additional rules – Concatenate – Grouping – Constant definition – String joining – Data type definition – Combination of them GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 15. Crosswalk EML2INSPIRE (ISO) • Implementation – mapping realization in Altova MapForce GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 16. Crosswalk EML2INSPIRE (ISO) • Implementation – result eml2inspire.xslt GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 17. Crosswalk EML2INSPIRE (ISO) • Transformation performance eml2inspire.xslt GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 18. Crosswalk EML2INSPIRE (ISO) • Transformation result check - ISO GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 19. Crosswalk EML2INSPIRE (ISO) • Transformation result check - INSPIRE GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 20. Conclusions&Future work • Developed MD specification should satisfy both EnvEurope users&INSPIRE • Partial efforts to bring EML2ISO has been realized • Further mapping has to be done • EnvEurope MD management system has to be implemented • We have to get dirty with MD and collect them GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium
  • 21. Thank you very much for your attention! Italian National Research Council - Institute of Ecosystem Study Italian National Research Council - Institute of Marine Sciences a.oggioni@ise.cnr .it tomas.kliment@gmail.com GI2011-X-BORDER-SDI/GDI BAD SCHANDAU (SAX) # DECIN (CZE) 23-24/5/2011 Symposium